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Rhizosphere frame system enables nondestructive live-imaging of legume-rhizobium interactions in the soil.
Hanna Nishida, Yoshikazu Shimoda, Khin Thuzar Win, Haruko Imaizumi-AnrakuJ Plant Res. Sep 2023;136(5):769-780. doi: 10.1007/s10265-023-01476-2. Epub 2023 Jul 4. -
Methylocystis iwaonis sp. nov., a type II methane-oxidizing bacterium from surface soil of a rice paddy field in Japan, and emended description of the genus Methylocystis ( ex Whittenbury et al. 1970) Bowman et al. 1993
Hirotaka Kaise, Joseph Benewindé Sawadogo, Mohammad Saiful Alam, Chihoko Ueno, Dayéri Dianou, Rina Shinjo, Susumu AsakawaInt J Syst Evol Microbiol. 2023 Jun;73(6). doi: 10.1099/ijsem.0.005925. -
Type-specific quantification of particulate methane monooxygenase gene of methane-oxidizing bacteria at the oxic-anoxic interface of a surface paddy soil by digital PCR
Rina Shinjo, Fumika Oe, Koki Nakagawa, Jun Murase, Susumu Asakawa, Takeshi WatanabeEnviron Microbiol Rep . Apr 20, 2023. doi: 10.1111/1758-2229.13155. Online ahead of print. -
Facilitative interaction networks in experimental microbial community dynamics
Hiroaki Fujita, Masayuki Ushio, Kenta Suzuki, Masato S. Abe, Masato Yamamichi, Yusuke Okazaki, Alberto Canarini, Ibuki Hayashi, Keitaro Fukushima, Shinji Fukuda, E. Toby Kiers, and Hirokazu TojuFront. Microbiol., April 11, 2023 Sec. Systems Microbiology Volume 14 - 2023. doi.org/10.3389/fmicb.2023.1153952 -
Alternative stable states, nonlinear behavior, and predictability of microbiome dynamics
Hiroaki Fujita, Masayuki Ushio, Kenta Suzuki, Masato S Abe, Masato Yamamichi, Koji Iwayama, Alberto Canarini, Ibuki Hayashi, Keitaro Fukushima, Shinji Fukuda, E Toby Kiers, Hirokazu TojuMicrobiome . Mar 29, 2023;11(1):63. doi: 10.1186/s40168-023-01474-5. -
Deciphering nitrous oxide emissions from tropical soils of different land uses
Jinsen Zheng, Tadashi Sakata, Sukartiningsih, and Kazumichi FujiiSci Total Environ. Mar 1, 2023 ;862:160916. doi: 10.1016/j.scitotenv.2022.160916. Epub 2022 Dec 14. -
Feature-based algorithm for large-scale rice phenology detection based on satellite images
Xin Zhao, Kazuya Nishina, Tomoko Kawaguchi Akitsu, Liguang Jiang, Yuji Masutomi, Kenlo Nishida NasaharaAgricultural and Forest Meteorology Volume 329, February 15, 2023. doi: 10.1016/j.agrformet.2022.109283 -
Feature-based algorithm for large-scale rice phenology detection based on satellite images
Xin Zhao a, Kazuya Nishina a, Tomoko Kawaguchi Akitsu b, Liguang Jiang c, Yuji Masutomi d, Kenlo Nishida Nasahara eAgricultural and Forest Meteorology Vol 329, 15 February 2023. doi: 10.1016/j.agrformet.2022.109283 -
Global soil metagenomics reveals ubiquitous yet previously-hidden predominance of Deltaproteobacteria in nitrogen-fixing microbiome
Yoko Masuda, Kazumori Mise, Zhenxing Xu, Zhengcheng Zhang, Yutaka Shiratori, Keishi Senoo, and Hideomi ItohPreprint. bioRxiv. doi.org/10.1101/2022.12.09.519847. -
Type III effector provides a novel symbiotic pathway in legume-rhizobia symbiosis
Safirah Tasa Nerves Ratu, Lidia Amelia, and Shin OkazakiBioscience, Biotechnology, and Biochemistry, Nov 11 ,2022;87(1):28-37. doi: 10.1093/bbb/zbac178.
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