Achivements List | dSOIL Project

First Microscale Data on Depth Profiles of Microbial N₂O Reduction, O2 Availability, and Pore Networks Inside Contrasting Single Soil Aggregates

S. Mitsunobu, R. Wagai, H. Shimada, H. Kato, K. Ito, S. Sato, M. Hayatsu, K. Minamisawa

Soil Biol. Biochem. 2024,109684. doi: 10.1016/j.soilbio.2024.109684
Invited lecture by Project Manager Kiwamu Minamisawa on IDEC Seminar

Soil inoculation and structural genomics of plant-associated microbes

Nov 1, 2024, Hiroshima
Does Rhizobial Inoculation Change the Microbial Community in Field Soils? A‍ ‍Comparison with Agricultural Land-use Changes

Shintaro Hara, Kaori Kakizaki, Masaru Bamba, Manabu Itakura, Masayuki Sugawara, Atsuo Suzuki, Yuma Sasaki, Masanori Takeda, Kanako Tago, Tsubasa Ohbayashi, Toshihiro Aono, Luciano Nobuhiro Aoyagi, Hiroaki Shimada, Ryo Shingubara, Sachiko Masuda, Arisa Shibata, Ken Shirasu, Rota Wagai, Hiroko Akiyama, Shusei Sato, Kiwamu Minamisawa

Microbes Environ . 2024;39(3). doi: 10.1264/jsme2.ME24006
Invited lecture by Manabu Itakura on The 22nd International Conference on Nitrogen Fixation

Mitigation of greenhouse gas emissions using N₂O-reducing soybean Bradyrhizobia

Sep 10, 2024, Morocco
Growth and Yield Dynamics in Three Japanese Soybean Cultivars with Plant Growth-Promoting Pseudomonas spp. and Bradyrhizobium ottawaense Co-Inoculation

Khin Thuzar Win, Fukuyo Tanaka, Kiwamu Minamisawa, Haruko Imaizumi-Anraku

Microorganisms. 19 July, 2024 ;12(7), 1478. doi: 10.3390/microorganisms12071478
2 PCT applications, 3 foreign applications and 4 national applications
Invited lecture by Sachiko Masuda onPacBio APAC PRISM 2024

Uncovering microbiomes of the rice phyllosphere using long-read metagenomic sequencing

Jun 12, 2024, Bangkok
Dynamics of N₂O production and reduction processes in a soybean field revealed by isotopocule analyses

Sakae Toyoda, Fadwa Damak, Shohei Hattori, Masanori Takeda, Hiroko Akiyama, Yuma Sasaki, Kiwamu Minamisawa

Soil Biology and Biochemistry. Feb 16, 2024 ;191. doi: 10.1016/j.soilbio.2024.109358
Uncovering plant microbiomes using long-read metagenomic sequencing

Sachiko Masuda, Pamela Gan, Yuya Kiguchi, Mizue Anda, Kazuhiro Sasaki, Arisa Shibata, Wataru Iwasaki, Wataru Suda, Ken Shirasu

Commun Biol . Mar 27, 2024 ;7(1):357. doi: 10.1038/s42003-024-05998-w.
Diurnal variation in methane emission from a rice paddy due to ebullition

Masako Kajiura, Takeshi Tokida

J Environ Qual. Mar-Apr, 2024. 53(2):265-273. doi: 10.1002/jeq2.20553. Epub 2024 Feb 28.
Invited lecture by Project Manager Kiwamu Minamisawa on The 10th Federation of Microbiological Societies of Japan Forum

Cool Earth via Microbes and citizen science

Feb 10, 2024, Tokyo
Invited lecture by Project Manager Kiwamu Minamisawa on The 6th Asian Conference on Plant-Microbe Symbosis and Nitrogen Fixation （6th APMNF）

Cool earth via nitrogen-fixing bacteria: Methanotrophs and Bradyrhizobium

Dec 15, 2023, Thailand
Methane and nitrous oxide emissions from agricultural fields in Japan and mitigation options: a review

Hiroko Akiyama

Soil Science and Plant Nutrition. Jun 4, 2024 ;Volume 70, 79-87. doi: 10.1080/00380768.2023.2298782
Invited lecture by Haruko Imaizumi-Anraku on the Symposium on Considering Agricultural Science Based on Symbiosis with Nature

Cool Earth via Microbes

Dec 15, 2023, Online
A novel Rhizobium sp. Chiba-1 strain exhibits the host range for nodule symbiosis in Lotus species

Yuhei Chiba, Mao Sasaki, Sachiko Masuda, Arisa Shibata, Ken Shirasu, Yasuyuki Kawaharada

Microbes Environ . Dec 1, 2023;38(4):ME23056. doi: 10.1264/jsme2.ME23056.
Invited lecture by Project Manager Kiwamu Minamisawa on the "First Japanese Society of Microbial Ecology Award" at the 36th Congress of the JSME

植物共生細菌の多様性と物質循環機能

Nov 30, 2023, Hamamatsu
Invited lecture by Satoshi Okubo at 507th Symposium by Research Institute for Sustainable Humanosphere.

Workshop; Search for microbes that reduce N₂O, a Greenhouse Gas from Soil.

Nov 16, 2023, Kyoto
Bradyrhizobium ottawaense efficiently reduces nitrous oxide through high nosZ gene expression

Sawa Wasai-Hara, Manabu Itakura, Arthur Fernandes Siqueira, Daisaku Takemoto, Masayuki Sugawara, Hisayuki Mitsui, Shusei Sato, Noritoshi Inagaki, Toshimasa Yamazaki, Haruko Imaizumi-Anraku, Yoshikazu Shimoda, Kiwamu Minamisawa

Sci Rep.Nov 1, 2023;13(1):18862. doi: 10.1038/s41598-023-46019-w.
Synergistic N₂-fixation and salt stress mitigation in soybean through dual inoculation of ACC deaminase-producing Pseudomonas and Bradyrhizobium

Khin Thuzar Win, Sawa Wasai-Hara, Fukuyo Tanaka, Aung Zaw Oo, Kiwamu Minamisawa, Yoshikazu Shimoda, Haruko Imaizumi-Anraku

Sci Rep. 2023 Oct 10;13(1):17050. doi: 10.1038/s41598-023-43891-4.
Rhizosphere frame system enables nondestructive live-imaging of legume-rhizobium interactions in the soil.

Hanna Nishida, Yoshikazu Shimoda, Khin Thuzar Win, Haruko Imaizumi-Anraku

J Plant Res. Sep 2023;136(5):769-780. doi: 10.1007/s10265-023-01476-2. Epub 2023 Jul 4.
Invited lecture by Satoshi Okubo at Public Symposium of Japanese Society of Soil Science and Plant Nutrition 2023 "Food, Soil, and Fertilizer - As Basic Science for Achieving the SDGs"

Exploring Greenhouse-Gas-Reducing Microbes with Citizen

Jul 29, 2023, Tokyo
Invited lecture by Satoshi Okubo and Yuichi Aoki at The Museum of Nature and Human Activities Seminar

Soil in a Bottle

Jul 23, 2023, Hyogo
Methylocystis iwaonis sp. nov., a type II methane-oxidizing bacterium from surface soil of a rice paddy field in Japan, and emended description of the genus Methylocystis ( ex Whittenbury et al. 1970) Bowman et al. 1993

Hirotaka Kaise, Joseph Benewindé Sawadogo, Mohammad Saiful Alam, Chihoko Ueno, Dayéri Dianou, Rina Shinjo, Susumu Asakawa

Int J Syst Evol Microbiol. 2023 Jun;73(6). doi: 10.1099/ijsem.0.005925.
Type-specific quantification of particulate methane monooxygenase gene of methane-oxidizing bacteria at the oxic-anoxic interface of a surface paddy soil by digital PCR

Rina Shinjo, Fumika Oe, Koki Nakagawa, Jun Murase, Susumu Asakawa, Takeshi Watanabe

Environ Microbiol Rep . Apr 20, 2023. doi: 10.1111/1758-2229.13155. Online ahead of print.
Facilitative interaction networks in experimental microbial community dynamics

Hiroaki Fujita, Masayuki Ushio, Kenta Suzuki, Masato S. Abe, Masato Yamamichi, Yusuke Okazaki, Alberto Canarini, Ibuki Hayashi, Keitaro Fukushima, Shinji Fukuda, E. Toby Kiers, and Hirokazu Toju

Front. Microbiol., April 11, 2023 Sec. Systems Microbiology Volume 14 - 2023. doi.org/10.3389/fmicb.2023.1153952

First Microscale Data on Depth Profiles of Microbial N₂O Reduction, O2 Availability, and Pore Networks Inside Contrasting Single Soil Aggregates

Invited lecture by Project Manager Kiwamu Minamisawa on IDEC Seminar

Does Rhizobial Inoculation Change the Microbial Community in Field Soils? A‍ ‍Comparison with Agricultural Land-use Changes

Invited lecture by Manabu Itakura on The 22nd International Conference on Nitrogen Fixation

Growth and Yield Dynamics in Three Japanese Soybean Cultivars with Plant Growth-Promoting Pseudomonas spp. and Bradyrhizobium ottawaense Co-Inoculation

2 PCT applications, 3 foreign applications and 4 national applications

Invited lecture by Sachiko Masuda onPacBio APAC PRISM 2024

Dynamics of N₂O production and reduction processes in a soybean field revealed by isotopocule analyses

Uncovering plant microbiomes using long-read metagenomic sequencing

Diurnal variation in methane emission from a rice paddy due to ebullition

Invited lecture by Project Manager Kiwamu Minamisawa on The 10th Federation of Microbiological Societies of Japan Forum

Invited lecture by Project Manager Kiwamu Minamisawa on The 6th Asian Conference on Plant-Microbe Symbosis and Nitrogen Fixation （6th APMNF）

Methane and nitrous oxide emissions from agricultural fields in Japan and mitigation options: a review

Invited lecture by Haruko Imaizumi-Anraku on the Symposium on Considering Agricultural Science Based on Symbiosis with Nature

A novel Rhizobium sp. Chiba-1 strain exhibits the host range for nodule symbiosis in Lotus species

Invited lecture by Project Manager Kiwamu Minamisawa on the "First Japanese Society of Microbial Ecology Award" at the 36th Congress of the JSME

Invited lecture by Satoshi Okubo at 507th Symposium by Research Institute for Sustainable Humanosphere.

Bradyrhizobium ottawaense efficiently reduces nitrous oxide through high nosZ gene expression

Synergistic N₂-fixation and salt stress mitigation in soybean through dual inoculation of ACC deaminase-producing Pseudomonas and Bradyrhizobium

Rhizosphere frame system enables nondestructive live-imaging of legume-rhizobium interactions in the soil.

Invited lecture by Satoshi Okubo at Public Symposium of Japanese Society of Soil Science and Plant Nutrition 2023 "Food, Soil, and Fertilizer - As Basic Science for Achieving the SDGs"

Invited lecture by Satoshi Okubo and Yuichi Aoki at The Museum of Nature and Human Activities Seminar

Methylocystis iwaonis sp. nov., a type II methane-oxidizing bacterium from surface soil of a rice paddy field in Japan, and emended description of the genus Methylocystis ( ex Whittenbury et al. 1970) Bowman et al. 1993

Type-specific quantification of particulate methane monooxygenase gene of methane-oxidizing bacteria at the oxic-anoxic interface of a surface paddy soil by digital PCR

Facilitative interaction networks in experimental microbial community dynamics