Achivements List | dSOIL Project

Fillable and Unfillable Gaps in Plant Transcriptome under Field and Controlled Environments

Yoichi Hashida, Ayumi Tezuka, Yasuyuki Nomura, Mari Kamitani, Makoto Kashima, Yuko Kurita, and Atsushi J Nagano

Plant Cell & Environment, 2022 Aug;45(8):2410-2427. doi: 10.1111/pce.14367. Epub 2022 Jun 21.
DeLTa-Seq: direct-lysate targeted RNA-Seq from crude tissue lysate

Makoto Kashima, Mari Kamitani, Yasuyuki Nomura, Natsumi Mori-Moriyama, Shigeyuki Betsuyaku, Hiromi Hirata, and Atsushi J. Nagano

Plant Methods . Aug 6 ,2022;18(1):99. doi: 10.1186/s13007-022-00930-x
Invited lecture by Project Manager Kiwamu Minamisawa, Satoshi Okubo, Yuichi Aoki at The Museum of Nature and Human Activities Seminar

Soil in a Bottle

July 23, 2022, Hyogo
Invited lecture by Project Manager Kiwamu Minamisawa at Ryukoku University Seminar on Molecular Biology and Plant Molecular Biology

Prevention of global warming by molecular biology

July 22, 2022, Ryukoku University
Invited lecture by Masayuki Sugawara at the 2022 International Symposium and Annual Meeting of the KSABC　

Symbiotic incompatibility between soybean and Bradyrhizobium via effector-triggered immunity

June 27-29, 2022, Korea
Invited lecture by Satoshi Okubo and Yuichi Aoki at the 2022 Annual Meeting of the Japanese Society for Soil Microbiology

Citizen science-based search for microorganisms to reduce greenhouse gas derived from soil

June 18, 2022, Online/Kagoshima
Invited lecture by Project Manager Kiwamu Minamisawa at The Institution of professional livestock engineers, Japan

Mitigation of greenhouse gas emissions from agricultural lands by optimizing nitrogen and carbon cycles

June 11, 2022, Online
In vivo evidence of single 13C and 15N isotope-labeled methanotrophic nitrogen-fixing bacterial cells in rice roots.

Shintaro Hara, Naohisa Wada, Sliver Sung-Yun Hsiao, Meng Zhang, Zhihua Bao, Yoshiyuki Iizuka, Der-Chuen Lee, Shusei Sato, Sen-Lin Tang, and Kiwamu Minamisawa

mBio, May 24, 2022;13(3), e0125522. doi: 10.1128/mbio.01255-22.
Fillable and unfillable gaps in plant transcriptome under field and controlled environments

Yoichi Hashida, Ayumi Tezuka, Yasuyuki Nomura, Mari Kamitani, Makoto Kashima, Yuko Kurita, and Atsushi J. Nagano

Plant Cell & Environment, May 24, 2022 doi: 10.1111/pce.14367
Short review: Insights into niche differentiation of bacterial community living in the soil aggregate structure

Koji Ito, Rota Wagai

Japanese Journal of Pesticide Science, 2022 Vol47 1 p. 5-7, doi: 15.1584/jpestics.W22-08
Root-specific CLE3 expression is required for WRKY33activation in Arabidopsis shoots

Dichao Ma, Satoshi Endo, Eriko Betsuyaku, Toru Fujiwara, Shigeyuki Betsuyaku, and Hiroo Fukuda

Plant Mol Biol, 2022 Feb;108(3):225-239. doi: 10.1007/s11103-021-01234-9. Epub 2022 Jan 17.
Overview of recent nitrifying microbial research

Masahito Hayatsu, Chie Katsuyama, and Kanako Tago

Soil Science and Plant Nutrition, Volume 67, 2021 - Issue 6,619-632. doi: 10.1080/00380768.2021.1981119
Invited lecture by Project Manager Kiwamu Minamisawa at the 2022 Annual Meeting of JSBBA

Biogeochemical cycling of nitrogen by plant-associated microbes

March 16, 2022, Online
Invited lecture by Shin Okazaki at the 2022 Annual Meeting of JSBBA

Novel symbiotic pathway in legume-rhizobium symbiosis

March 16, 2022, Online
Invited lecture by Project Manager Kiwamu Minamisawa at Advanced Seminar Series of Research Institute for Microbial Diseases

Conflict and genome evolution between rhizobia and legumes: Mysterious roles of rhizobial T3SS effectors in symbiosis

January 12, 2022, Online
Plant-associated bacteria mediating nitrogen cycle

Kiwamu Minamisawa

Soil Microorganisms, in press
Appropriate chamber deployment time for separate quantification of CH₄ emissions via plant and ebullition from rice paddies using a modified closed-chamber method

Masako Kajiura and Takeshi Tokida

Journal of Agricultural Meteorology, 2022, 78(1), 41-45. doi: 10.2480/agrmet.D-21-00033.
Invited lecture by Project Manager Kiwamu Minamisawa at the Plant Science Symposium 2021

Cool Earth via Microbes in Agriculture

November 30, 2021, Online
Quantifying bubbling emission (ebullition) of methane from a rice paddy using high-time-resolution concentration data obtained during a closed-chamber measurement

Masako Kajiura and Takeshi Tokida

Journal of Agricultural Meteorology, 2021, 77(4): 245-252. doi: 10.2480/agrmet.D-21-00022.
Appropriate chamber deployment time for separate quantification of CH₄ emissions via plant and ebullition from rice paddies using a modified closed-chamber method

Masako Kajiura and Takeshi Tokida

Journal of Agricultural Meteorology, in press. doi: 10.2480/agrmet.D-21-00033.
Synergistic and Offset Effects of Fungal Species Combinations on Plant Performance

Yoshie Hori, Hiroaki Fujita, Kei Hiruma, Kazuhiko Narisawa, and Hirokazu Toju

Front Microbiol, Sep 13, 2021,12:713180. doi: 10.3389/fmicb.2021.713180.
Undervalued Pseudo-nifH Sequences in Public Databases Distort Metagenomic Insights into Biological Nitrogen Fixers

Kazumori Mise, Yoko Masuda, Keishi Senoo, and Hideomi Itoh

mSphere, Nov 17, 2021, e0078521. doi: 10.1128/msphere.00785-21.
Quantification of global and national nitrogen budgets for crop production

Xin Zhang, Tan Zou, Luis Lassaletta, Nathaniel D. Mueller, Francesco N. Tubiello, Matthew D. Lisk, Chaoqun Lu, Richard T. Conant, Christopher D. Dorich, James Gerber, Hanqin Tian, Tom Bruulsema, Tai McClellan Maaz, Kazuya Nishina, Benjamin Leon Bodirsky, Alexander Popp, Lex Bouwman, Arthur Beusen, Jinfeng Chang, Petr Havlík, David Leclère, Josep G. Canadell, Robert B. Jackson, Patrick Heffer, Nathan Wanner, Weifeng Zhang, and Eric A. Davidson

Nature Food, 2021, 2, 529–540. doi: 10.1038/s43016-021-00318-5.
Invited lecture by Project Manager Kiwamu Minamisawa at AIST Symposium

Nitrogen-transforming microorganisms and mitigation of greenhouse gas emissions

November 8, 2021, Online
Invited lecture by Project Manager Kiwamu Minamisawa at Symposium to Commemorate the 20th Anniversary of Riken BioResource Research Center

Plant-associated microbes: rhizobia and methanotrophic diazotroph

October 20-22, 2021, Online

Fillable and Unfillable Gaps in Plant Transcriptome under Field and Controlled Environments

DeLTa-Seq: direct-lysate targeted RNA-Seq from crude tissue lysate

Invited lecture by Project Manager Kiwamu Minamisawa, Satoshi Okubo, Yuichi Aoki at The Museum of Nature and Human Activities Seminar

Invited lecture by Project Manager Kiwamu Minamisawa at Ryukoku University Seminar on Molecular Biology and Plant Molecular Biology

Invited lecture by Masayuki Sugawara at the 2022 International Symposium and Annual Meeting of the KSABC

Invited lecture by Satoshi Okubo and Yuichi Aoki at the 2022 Annual Meeting of the Japanese Society for Soil Microbiology

Invited lecture by Project Manager Kiwamu Minamisawa at The Institution of professional livestock engineers, Japan

In vivo evidence of single 13C and 15N isotope-labeled methanotrophic nitrogen-fixing bacterial cells in rice roots.

Fillable and unfillable gaps in plant transcriptome under field and controlled environments

Short review: Insights into niche differentiation of bacterial community living in the soil aggregate structure

Root-specific CLE3 expression is required for WRKY33activation in Arabidopsis shoots

Overview of recent nitrifying microbial research

Invited lecture by Project Manager Kiwamu Minamisawa at the 2022 Annual Meeting of JSBBA

Invited lecture by Shin Okazaki at the 2022 Annual Meeting of JSBBA

Invited lecture by Project Manager Kiwamu Minamisawa at Advanced Seminar Series of Research Institute for Microbial Diseases

Plant-associated bacteria mediating nitrogen cycle

Appropriate chamber deployment time for separate quantification of CH₄ emissions via plant and ebullition from rice paddies using a modified closed-chamber method

Invited lecture by Project Manager Kiwamu Minamisawa at the Plant Science Symposium 2021

Quantifying bubbling emission (ebullition) of methane from a rice paddy using high-time-resolution concentration data obtained during a closed-chamber measurement

Appropriate chamber deployment time for separate quantification of CH₄ emissions via plant and ebullition from rice paddies using a modified closed-chamber method

Synergistic and Offset Effects of Fungal Species Combinations on Plant Performance

Undervalued Pseudo-nifH Sequences in Public Databases Distort Metagenomic Insights into Biological Nitrogen Fixers

Quantification of global and national nitrogen budgets for crop production

Invited lecture by Project Manager Kiwamu Minamisawa at AIST Symposium

Invited lecture by Project Manager Kiwamu Minamisawa at Symposium to Commemorate the 20th Anniversary of Riken BioResource Research Center

Invited lecture by Masayuki Sugawara at the 2022 International Symposium and Annual Meeting of the KSABC　