Achivements List | dSOIL Project

Invited lecture by Satoshi Okubo at Public Symposium of Japanese Society of Soil Science and Plant Nutrition 2023 "Food, Soil, and Fertilizer - As Basic Science for Achieving the SDGs"

Exploring Greenhouse-Gas-Reducing Microbes with Citizen

Jul 29, 2023, Tokyo
Invited lecture by Satoshi Okubo and Yuichi Aoki at The Museum of Nature and Human Activities Seminar

Soil in a Bottle

Jul 23, 2023, Hyogo
Methylocystis iwaonis sp. nov., a type II methane-oxidizing bacterium from surface soil of a rice paddy field in Japan, and emended description of the genus Methylocystis ( ex Whittenbury et al. 1970) Bowman et al. 1993

Hirotaka Kaise, Joseph Benewindé Sawadogo, Mohammad Saiful Alam, Chihoko Ueno, Dayéri Dianou, Rina Shinjo, Susumu Asakawa

Int J Syst Evol Microbiol. 2023 Jun;73(6). doi: 10.1099/ijsem.0.005925.
Type-specific quantification of particulate methane monooxygenase gene of methane-oxidizing bacteria at the oxic-anoxic interface of a surface paddy soil by digital PCR

Rina Shinjo, Fumika Oe, Koki Nakagawa, Jun Murase, Susumu Asakawa, Takeshi Watanabe

Environ Microbiol Rep . Apr 20, 2023. doi: 10.1111/1758-2229.13155. Online ahead of print.
Facilitative interaction networks in experimental microbial community dynamics

Hiroaki Fujita, Masayuki Ushio, Kenta Suzuki, Masato S. Abe, Masato Yamamichi, Yusuke Okazaki, Alberto Canarini, Ibuki Hayashi, Keitaro Fukushima, Shinji Fukuda, E. Toby Kiers, and Hirokazu Toju

Front. Microbiol., April 11, 2023 Sec. Systems Microbiology Volume 14 - 2023. doi.org/10.3389/fmicb.2023.1153952
Alternative stable states, nonlinear behavior, and predictability of microbiome dynamics

Hiroaki Fujita, Masayuki Ushio, Kenta Suzuki, Masato S Abe, Masato Yamamichi, Koji Iwayama, Alberto Canarini, Ibuki Hayashi, Keitaro Fukushima, Shinji Fukuda, E Toby Kiers, Hirokazu Toju

Microbiome . Mar 29, 2023;11(1):63. doi: 10.1186/s40168-023-01474-5.
Deciphering nitrous oxide emissions from tropical soils of different land uses

Jinsen Zheng, Tadashi Sakata, Sukartiningsih, and Kazumichi Fujii

Sci Total Environ. Mar 1, 2023 ;862:160916. doi: 10.1016/j.scitotenv.2022.160916. Epub 2022 Dec 14.
Invited lecture by Project Manager Kiwamu Minamisawa at The 96th Annual Meeting of Japanese Society for Bacteriology

Cool Earth via Microbes: Mitigation of greenhouse gas emissions from agricultural lands

March 18, 2023, Himeji
Invited lecture by Project Manager Kiwamu Minamisawa at Mitsuru Miyata's Bio-Amazing - Priority Talk: What Will Happen to That Topic in Bio?

What is "Cool Earth" using soil microorganisms to reduce greenhouse gases?

March 10, 2023, Online
Invited lecture by Project Manager Kiwamu Minamisawa at Workshop on Nitrogen Circulating Society

Cool Earth via Microbes in Agriculture

March 8, 2023, Kanagawa/Online
Invited online lecture by Satoshi Okubo at Geo Festival in Kushiro

Soil in a Bottle

Jan 8, 2023, Kushiro
Invited lecture by Satoshi Okubo, Yuichi Aoki, Souichiro Toda at The Museum of Nature and Human Activities Seminar

Soil in a Bottle

Dec 17, 2022, Hyogo
Global soil metagenomics reveals ubiquitous yet previously-hidden predominance of Deltaproteobacteria in nitrogen-fixing microbiome

Yoko Masuda, Kazumori Mise, Zhenxing Xu, Zhengcheng Zhang, Yutaka Shiratori, Keishi Senoo, and Hideomi Itoh

Preprint. bioRxiv. doi.org/10.1101/2022.12.09.519847.
Type III effector provides a novel symbiotic pathway in legume-rhizobia symbiosis

Safirah Tasa Nerves Ratu, Lidia Amelia, and Shin Okazaki

Bioscience, Biotechnology, and Biochemistry, Nov 11 ,2022;87(1):28-37. doi: 10.1093/bbb/zbac178.
Mitigation of greenhouse gas emission by nitrogen-fixing bacteria

Kiwamu Minamisawa

Bioscience, Biotechnology, and Biochemistry, Nov 10, 2022;87(1):7-12. doi: 10.1093/bbb/zbac177.
Invited lecture by Hiromi Kato at 4th International Conference on Persulfide and Sulfur Metabolism in Biology and Medicine

Bacteria utilize sulfide in the air

Nov 1, 2022, Online
A New Classification of Lysin Motif Receptor-like Kinases in Lotus Japonicus

Hafijur Ruman and Yasuyuki Kawaharada

Plant and Cell Physiology, 2022 Nov 5;pcac156. doi: 10.1093/pcp/pcac156.
Strains of Bradyrhizobium barranii sp. nov associated with legumes native to Canada are symbionts of soybeans and belong to different subspecies and symbiovars

Eden S. P. Bromfield, Sylvie Cloutier, Sawa Wasai-Hara, and Kiwamu Minamisawa

Int J Syst Evol Microbiol. Oct 19, 2022;72(10). doi: 10.1099/ijsem.0.005549.
Anaeromyxobacter oryzae sp. nov., Anaeromyxobacter diazotrophicus sp. nov. and Anaeromyxobacter paludicola sp. nov., isolated from paddy soils

Hideomi Itoh, Zhenxing Xu, Kazumori Mise, Yoko Masuda, Natsumi Ushijima, Chie Hayakawa, Yutaka Shiratori, and Keishi Senoo

Int J Syst Evol Microbiol, Oct 3, 2022;72(10), doi.org/10.1099/ijsem.0.005546
History of anthropogenic Nitrogen inputs (HaNi) to the terrestrial biosphere: 2 A 5-arcmin resolution annual dataset from 1860 to 2019

Hanqin Tian, Zihao Bian, Hao Shi, Xiaoyu Qin, Naiqing Pan, Chaoqun Lu, Shufen Pan, Francesco N. Tubiello, Jinfeng Chang, Giulia Conchedda, Junguo Liu, Nathan Mueller, Kazuya Nishina, Rongting Xu, Jia Yang, Liangzhi You, and Bowen Zhang

Eath System Science Data, Oct 18, 2022;14(10) ESSD, 14, 4551–4568. doi: 10.1594/PANGAEA.942069 　　
Intercontinental Diversity of Caballeronia Gut Symbionts in the Conifer Pest Bug Leptoglossus occidentalis

Tsubasa Ohbayashi, Raynald Cossard, Gaëlle Lextrait, Takahiro Hosokawa, Vincent Lesieur, Kazutaka Takeshita, Kanako Tago, Peter Mergaert, and Yoshitomo Kikuchi

Microbes and Environments, Aug 1, 2022;37(3), ME22042 doi:10.1264/jsme2.ME22042
Invited lecture by Project Manager Kiwamu Minamisawa at Research Foundation for Opto-Science and Technology

Mitigation of greenhouse gas emissions from agricultural lands by optimizing nitrogen and carbon cycles

Oct 4, 2022, Shizuoka
Invited lecture by Project Manager Kiwamu Minamisawa at The 60th Annual Meeting of the Biophysical Society of Japan

Mitigation of greenhouse gas emissions from agricultural lands by optimizing nitrogen and carbon cycles

Sep 30, 2022, Hokkaido/Online
Invited lecture by Project Manager Kiwamu Minamisawa at Workshop of Stable Isotope Applications in Sciences

Studies on mitigation of greenhouse gas emissions from agricultural lands by stable isotope probings

Sep 13, 2022, Tokyo
Effects of source sample amount on biodiversity surveys of bacteria, fungi, and nematodes in soil ecosystems

Takuya Kageyama and Hirokazu Toju

Frontiers in Ecology and Evolution, Sep 13, 2022 doi: 10.3389/fevo.2022.959945

Invited lecture by Satoshi Okubo at Public Symposium of Japanese Society of Soil Science and Plant Nutrition 2023 "Food, Soil, and Fertilizer - As Basic Science for Achieving the SDGs"

Invited lecture by Satoshi Okubo and Yuichi Aoki at The Museum of Nature and Human Activities Seminar

Methylocystis iwaonis sp. nov., a type II methane-oxidizing bacterium from surface soil of a rice paddy field in Japan, and emended description of the genus Methylocystis ( ex Whittenbury et al. 1970) Bowman et al. 1993

Type-specific quantification of particulate methane monooxygenase gene of methane-oxidizing bacteria at the oxic-anoxic interface of a surface paddy soil by digital PCR

Facilitative interaction networks in experimental microbial community dynamics

Alternative stable states, nonlinear behavior, and predictability of microbiome dynamics

Deciphering nitrous oxide emissions from tropical soils of different land uses

Invited lecture by Project Manager Kiwamu Minamisawa at The 96th Annual Meeting of Japanese Society for Bacteriology

Invited lecture by Project Manager Kiwamu Minamisawa at Mitsuru Miyata's Bio-Amazing - Priority Talk: What Will Happen to That Topic in Bio?

Invited lecture by Project Manager Kiwamu Minamisawa at Workshop on Nitrogen Circulating Society

Invited online lecture by Satoshi Okubo at Geo Festival in Kushiro

Invited lecture by Satoshi Okubo, Yuichi Aoki, Souichiro Toda at The Museum of Nature and Human Activities Seminar

Global soil metagenomics reveals ubiquitous yet previously-hidden predominance of Deltaproteobacteria in nitrogen-fixing microbiome

Type III effector provides a novel symbiotic pathway in legume-rhizobia symbiosis

Mitigation of greenhouse gas emission by nitrogen-fixing bacteria

Invited lecture by Hiromi Kato at 4th International Conference on Persulfide and Sulfur Metabolism in Biology and Medicine

A New Classification of Lysin Motif Receptor-like Kinases in Lotus Japonicus

Strains of Bradyrhizobium barranii sp. nov associated with legumes native to Canada are symbionts of soybeans and belong to different subspecies and symbiovars

Anaeromyxobacter oryzae sp. nov., Anaeromyxobacter diazotrophicus sp. nov. and Anaeromyxobacter paludicola sp. nov., isolated from paddy soils

History of anthropogenic Nitrogen inputs (HaNi) to the terrestrial biosphere: 2 A 5-arcmin resolution annual dataset from 1860 to 2019

Intercontinental Diversity of Caballeronia Gut Symbionts in the Conifer Pest Bug Leptoglossus occidentalis

Invited lecture by Project Manager Kiwamu Minamisawa at Research Foundation for Opto-Science and Technology

Invited lecture by Project Manager Kiwamu Minamisawa at The 60th Annual Meeting of the Biophysical Society of Japan

Invited lecture by Project Manager Kiwamu Minamisawa at Workshop of Stable Isotope Applications in Sciences

Effects of source sample amount on biodiversity surveys of bacteria, fungi, and nematodes in soil ecosystems