論文 | dSOILプロジェクト

Bradyrhizobium ottawaense efficiently reduces nitrous oxide through high nosZ gene expression

Sawa Wasai-Hara, Manabu Itakura, Arthur Fernandes Siqueira, Daisaku Takemoto, Masayuki Sugawara, Hisayuki Mitsui, Shusei Sato, Noritoshi Inagaki, Toshimasa Yamazaki, Haruko Imaizumi-Anraku, Yoshikazu Shimoda, Kiwamu Minamisawa

Sci Rep . Nov 1, 2023;13(1):18862. doi: 10.1038/s41598-023-46019-w.
土壌メタゲノム情報から脱窒関連酵素の構造的多様性を明らかにする −脱窒制御剤の開発に向けて−

原新太郎、圷ゆき枝、鈴木倫太郎、早津雅仁、多胡香奈子

土と微生物，Vol.77 No.2 pp.61-73
農耕地土壌における硝化による温室効果ガス一酸化二窒素(N₂O)の発生とその対策 ―硝化制御によるN₂O発生抑制剤開発の基盤構築―

大林翼、Nobuhiro Luciano Aoyagi、山崎俊正、多胡香奈子、早津雅仁

土と微生物，Vol.77 No.2 pp.51-60
農業用微生物資材の研究開発動向のミニレビュー：ブレイクスルーに向けた13の取組み

菅野学、玉木秀幸

土と微生物，Vol.77 No.2 pp.74-92
ダイズ根粒菌のN₂O還元能を利用したN₂O排出削減

板倉学

北隆館「アグリバイオ」2023年11月号
Synergistic N₂-fixation and salt stress mitigation in soybean through dual inoculation of ACC deaminase-producing Pseudomonas and Bradyrhizobium

Khin Thuzar Win, Sawa Wasai-Hara, Fukuyo Tanaka, Aung Zaw Oo, Kiwamu Minamisawa, Yoshikazu Shimoda, Haruko Imaizumi-Anraku

Sci Rep . 2023 Oct 10;13(1):17050. doi: 10.1038/s41598-023-43891-4.
Synergistic N₂-fixation and salt stress mitigation in soybean through dual inoculation of ACC deaminase-producing Pseudomonas and Bradyrhizobium

Khin Thuzar Win, Sawa Wasai-Hara, Fukuyo Tanaka, Aung Zaw Oo, Kiwamu Minamisawa, Yoshikazu Shimoda, Haruko Imaizumi-Anraku

Sci Rep. 2023 Oct 10;13(1):17050. doi: 10.1038/s41598-023-43891-4.
Rhizosphere frame system enables nondestructive live-imaging of legume-rhizobium interactions in the soil.

Hanna Nishida, Yoshikazu Shimoda, Khin Thuzar Win, Haruko Imaizumi-Anraku

J Plant Res. Sep 2023;136(5):769-780. doi: 10.1007/s10265-023-01476-2. Epub 2023 Jul 4.
Methylocystis iwaonis sp. nov., a type II methane-oxidizing bacterium from surface soil of a rice paddy field in Japan, and emended description of the genus Methylocystis ( ex Whittenbury et al. 1970) Bowman et al. 1993

Hirotaka Kaise, Joseph Benewindé Sawadogo, Mohammad Saiful Alam, Chihoko Ueno, Dayéri Dianou, Rina Shinjo, Susumu Asakawa

Int J Syst Evol Microbiol. 2023 Jun;73(6). doi: 10.1099/ijsem.0.005925.
市民参加型研究プロジェクト「地球冷却微生物を探せ」の現状と展望

大久保智司、青木裕一、戸田聡一郎、加藤広海

化学と生物，Vol.61 No.5 pp.210-213
土壌由来の温室効果ガス削減に向けた市民科学による微生物探索

大久保智司、青木裕一

土と微生物，Vol.77 No.1 pp.34-39
土壌微生物群集構造を支配する土壌環境の不均質性に関するミニレビュー：微生物ハビタットとしての土壌を捉えなおす

伊藤虹児、和穎朗太

土と微生物，Vol.77 No.1 pp.18-28
土壌試料における総N₂O還元速度の定量

新宮原諒、中島泰弘、和穎朗太

土と微生物，Vol.77 No.1 pp.8-17
Type-specific quantification of particulate methane monooxygenase gene of methane-oxidizing bacteria at the oxic-anoxic interface of a surface paddy soil by digital PCR

Rina Shinjo, Fumika Oe, Koki Nakagawa, Jun Murase, Susumu Asakawa, Takeshi Watanabe

Environ Microbiol Rep . Apr 20, 2023. doi: 10.1111/1758-2229.13155. Online ahead of print.
Facilitative interaction networks in experimental microbial community dynamics

Hiroaki Fujita, Masayuki Ushio, Kenta Suzuki, Masato S. Abe, Masato Yamamichi, Yusuke Okazaki, Alberto Canarini, Ibuki Hayashi, Keitaro Fukushima, Shinji Fukuda, E. Toby Kiers, and Hirokazu Toju

Front. Microbiol., April 11, 2023 Sec. Systems Microbiology Volume 14 - 2023. doi.org/10.3389/fmicb.2023.1153952
施肥・栽培と温室効果ガス

秋山博子

新植物栄養・肥料学，朝倉書店，2023年4月5日
Alternative stable states, nonlinear behavior, and predictability of microbiome dynamics

Hiroaki Fujita, Masayuki Ushio, Kenta Suzuki, Masato S Abe, Masato Yamamichi, Koji Iwayama, Alberto Canarini, Ibuki Hayashi, Keitaro Fukushima, Shinji Fukuda, E Toby Kiers, Hirokazu Toju

Microbiome . Mar 29, 2023;11(1):63. doi: 10.1186/s40168-023-01474-5.
Revisiting process-based simulations of soil nitrite dynamics: Tighter cycling between nitrite and nitrate than considered previously

Jinsen Zheng, Kazumichi Fujii, Keisuke Koba, Wolfgang Wanek, Christoph Müller, Anne B. Jansen-Willems, Yasuhiro Nakajima, Rota Wagai, Alberto Canarini

Soil Biology and Biochemistry Volume 178, March 2023. doi.org/10.1016/j.soilbio.2023.108958
Deciphering nitrous oxide emissions from tropical soils of different land uses

Jinsen Zheng, Tadashi Sakata, Sukartiningsih, and Kazumichi Fujii

Sci Total Environ. Mar 1, 2023 ;862:160916. doi: 10.1016/j.scitotenv.2022.160916. Epub 2022 Dec 14.
Feature-based algorithm for large-scale rice phenology detection based on satellite images

Xin Zhao, Kazuya Nishina, Tomoko Kawaguchi Akitsu, Liguang Jiang, Yuji Masutomi, Kenlo Nishida Nasahara

Agricultural and Forest Meteorology Vol 329, February 15, 2023. doi: 10.1016/j.agrformet.2022.109283
ダイズ根粒菌のN₂O還元活性を利用した温室効果ガス（N₂O）の削減

板倉学

作物生産と土づくり，2022年 12月・2023年1月号 pp.10-15
Global soil metagenomics reveals ubiquitous yet previously-hidden predominance of Deltaproteobacteria in nitrogen-fixing microbiome

Yoko Masuda, Kazumori Mise, Zhenxing Xu, Zhengcheng Zhang, Yutaka Shiratori, Keishi Senoo, and Hideomi Itoh

Preprint. bioRxiv. doi.org/10.1101/2022.12.09.519847.
非マメ科作物の窒素固定エンドファイト

南澤究

作物生産と土づくり，2022年10•11月号 pp.21-25
Type III effector provides a novel symbiotic pathway in legume-rhizobia symbiosis

Safirah Tasa Nerves Ratu, Lidia Amelia, and Shin Okazaki

Bioscience, Biotechnology, and Biochemistry, Nov 11, 2022;87(1):28-37. doi: 10.1093/bbb/zbac178.
Mitigation of greenhouse gas emission by nitrogen-fixing bacteria

Kiwamu Minamisawa

Bioscience, Biotechnology, and Biochemistry, Dec 21, 2022;87(1):7-12. doi: 10.1093/bbb/zbac177.
A New Classification of Lysin Motif Receptor-like Kinases in Lotus Japonicus

Hafijur Ruman and Yasuyuki Kawaharada

Plant and Cell Physiology, 2022 Nov 5;pcac156. doi: 10.1093/pcp/pcac156.
Strains of Bradyrhizobium barranii sp. nov associated with legumes native to Canada are symbionts of soybeans and belong to different subspecies and symbiovars

Eden S. P. Bromfield, Sylvie Cloutier, Sawa Wasai-Hara, and Kiwamu Minamisawa

Int J Syst Evol Microbiol. Oct 19, 2022;72(10). doi: 10.1099/ijsem.0.005549.
Anaeromyxobacter oryzae sp. nov., Anaeromyxobacter diazotrophicus sp. nov. and Anaeromyxobacter paludicola sp. nov., isolated from paddy soils

Hideomi Itoh, Zhenxing Xu, Kazumori Mise, Yoko Masuda, Natsumi Ushijima, Chie Hayakawa, Yutaka Shiratori, and Keishi Senoo

Int J Syst Evol Microbiol, Oct 3, 2022;72(10), doi.org/10.1099/ijsem.0.005546
History of anthropogenic Nitrogen inputs (HaNi) to the terrestrial biosphere: 2 A 5-arcmin resolution annual dataset from 1860 to 2019

Hanqin Tian, Zihao Bian, Hao Shi, Xiaoyu Qin, Naiqing Pan, Chaoqun Lu, Shufen Pan, Francesco N. Tubiello, Jinfeng Chang, Giulia Conchedda, Junguo Liu, Nathan Mueller, Kazuya Nishina, Rongting Xu, Jia Yang, Liangzhi You, and Bowen Zhang

Eath System Science Data, Oct 18, 2022;14(10) ESSD, 14, 4551–4568. doi: 10.1594/PANGAEA.942069 　　
Intercontinental Diversity of Caballeronia Gut Symbionts in the Conifer Pest Bug Leptoglossus occidentalis

Tsubasa Ohbayashi, Raynald Cossard, Gaëlle Lextrait, Takahiro Hosokawa, Vincent Lesieur, Kazutaka Takeshita, Kanako Tago, Peter Mergaert, and Yoshitomo Kikuchi

Microbes and Environments, Aug 1, 2022;37(3), ME22042 doi:10.1264/jsme2.ME22042
Effects of source sample amount on biodiversity surveys of bacteria, fungi, and nematodes in soil ecosystems

Takuya Kageyama and Hirokazu Toju

Frontiers in Ecology and Evolution, Sep 13, 2022 doi: 10.3389/fevo.2022.959945
Fillable and Unfillable Gaps in Plant Transcriptome under Field and Controlled Environments

Yoichi Hashida, Ayumi Tezuka, Yasuyuki Nomura, Mari Kamitani, Makoto Kashima, Yuko Kurita, and Atsushi J Nagano

Plant Cell & Environment, 2022 Aug;45(8):2410-2427. doi: 10.1111/pce.14367. Epub 2022 Jun 21.
DeLTa-Seq: direct-lysate targeted RNA-Seq from crude tissue lysate

Makoto Kashima, Mari Kamitani, Yasuyuki Nomura, Natsumi Mori-Moriyama, Shigeyuki Betsuyaku, Hiromi Hirata, and Atsushi J. Nagano

Plant Methods . Aug 6 ,2022;18(1):99. doi: 10.1186/s13007-022-00930-x
水田から排出される温室効果ガス―メタンを削減するための育種的，栽培的アプローチ―

常田岳志

農業，No.1693 pp37-43.
温室効果ガス削減と土壌微生物学

南澤究

土と微生物 76(2): 36-42，doi: 10.18946/jssm.76.2_36
In vivo evidence of single 13C and 15N isotope-labeled methanotrophic nitrogen-fixing bacterial cells in rice roots.

Shintaro Hara, Naohisa Wada, Sliver Sung-Yun Hsiao, Meng Zhang, Zhihua Bao, Yoshiyuki Iizuka, Der-Chuen Lee, Shusei Sato, Sen-Lin Tang, and Kiwamu Minamisawa

mBio, May 24, 2022;13(3), e0125522. doi: 10.1128/mbio.01255-22.
Fillable and unfillable gaps in plant transcriptome under field and controlled environments

Yoichi Hashida, Ayumi Tezuka, Yasuyuki Nomura, Mari Kamitani, Makoto Kashima, Yuko Kurita, and Atsushi J. Nagano

Plant Cell & Environment, May 24, 2022 doi: 10.1111/pce.14367
窒素循環を担う植物共生微生物

南澤究

土と微生物 76(1): 4-11，日本農学賞受賞論文，doi: 10.18946/jssm.76.1_4
N₂O削減根粒菌の利用技術

南澤究

カーボンニュートラル2050アウトルック(日本電気協会新聞部) p.284－288
農耕地・畜産の温室効果ガス排出削減

秋山博子

カーボンニュートラル2050アウトルック(日本電気協会新聞部) p.280－283
土壌団粒構造中における微生物の棲み分けに関する科学的知見

伊藤虹児、和穎朗太

日本農薬学会誌 (和文誌), 2022年 47巻 1号 p. 5-7, doi: 15.1584/jpestics.W22-08
Root-specific CLE3 expression is required for WRKY33activation in Arabidopsis shoots

Dichao Ma, Satoshi Endo, Eriko Betsuyaku, Toru Fujiwara, Shigeyuki Betsuyaku, and Hiroo Fukuda

Plant Mol Biol, 2022 Feb;108(3):225-239. doi: 10.1007/s11103-021-01234-9. Epub 2022 Jan 17.
Overview of recent nitrifying microbial research

Masahito Hayatsu, Chie Katsuyama, and Kanako Tago

Soil Science and Plant Nutrition, Volume 67, 2021 - Issue 6,619-632. doi: 10.1080/00380768.2021.1981119
Appropriate chamber deployment time for separate quantification of CH₄ emissions via plant and ebullition from rice paddies using a modified closed-chamber method

Masako Kajiura and Takeshi Tokida

Journal of Agricultural Meteorology, 2022, 78(1), 41-45. doi: 10.2480/agrmet.D-21-00033.
Quantifying bubbling emission (ebullition) of methane from a rice paddy using high-time-resolution concentration data obtained during a closed-chamber measurement

Masako Kajiura and Takeshi Tokida

Journal of Agricultural Meteorology, 2021, 77(4): 245-252. doi: 10.2480/agrmet.D-21-00022.
Synergistic and Offset Effects of Fungal Species Combinations on Plant Performance

Yoshie Hori, Hiroaki Fujita, Kei Hiruma, Kazuhiko Narisawa, and Hirokazu Toju

Front Microbiol, Sep 13, 2021,12:713180. doi: 10.3389/fmicb.2021.713180.
Undervalued Pseudo-nifH Sequences in Public Databases Distort Metagenomic Insights into Biological Nitrogen Fixers

Kazumori Mise, Yoko Masuda, Keishi Senoo, and Hideomi Itoh

mSphere, Nov 17, 2021, e0078521. doi: 10.1128/msphere.00785-21.
Quantification of global and national nitrogen budgets for crop production

Xin Zhang, Tan Zou, Luis Lassaletta, Nathaniel D. Mueller, Francesco N. Tubiello, Matthew D. Lisk, Chaoqun Lu, Richard T. Conant, Christopher D. Dorich, James Gerber, Hanqin Tian, Tom Bruulsema, Tai McClellan Maaz, Kazuya Nishina, Benjamin Leon Bodirsky, Alexander Popp, Lex Bouwman, Arthur Beusen, Jinfeng Chang, Petr Havlík, David Leclère, Josep G. Canadell, Robert B. Jackson, Patrick Heffer, Nathan Wanner, Weifeng Zhang, and Eric A. Davidson

Nature Food, 2021, 2, 529–540. doi: 10.1038/s43016-021-00318-5.
Multiple Domains in the Rhizobial Type III Effector Bel2-5 Determine Symbiotic Efficiency With Soybean

Safirah Tasa Nerves Ratu, Atsushi Hirata, Christian Oliver Kalaw, Michiko Yasuda, Mitsuaki Tabuchi and Shin Okazaki

Front Plant Sci, 2021 Jun 7;12:689064. doi: 10.3389/fpls.2021.689064.
Evolution of rhizobial symbiosis islands through insertion sequence-mediated deletion and duplication

Haruka Arashida, Haruka Odake, Masayuki Sugawara, Ryota Noda, Kaori Kakizaki, Satoshi Ohkubo, Hisayuki Mitsui, Shusei Sato, and Kiwamu Minamisawa（Corresponding author）

ISME J, Jul 16, 2021. doi: 10.1038/s41396-021-01035-4.
第１回国際シンポジウム「農業における土壌微生物を活用したクールアース」の開催報告

板倉学

日本土壌肥料学会誌 2021, 92(3)
土壌・植物微生物叢の中で行われるマメ科植物の根粒共生

川原田泰之

月刊誌アグリバイオ（北隆舘）2021年1月号

Bradyrhizobium ottawaense efficiently reduces nitrous oxide through high nosZ gene expression

土壌メタゲノム情報から脱窒関連酵素の構造的多様性を明らかにする −脱窒制御剤の開発に向けて−

農耕地土壌における硝化による温室効果ガス一酸化二窒素(N₂O)の発生とその対策 ―硝化制御によるN₂O発生抑制剤開発の基盤構築―

農業用微生物資材の研究開発動向のミニレビュー：ブレイクスルーに向けた13の取組み

ダイズ根粒菌のN₂O還元能を利用したN₂O排出削減

Synergistic N₂-fixation and salt stress mitigation in soybean through dual inoculation of ACC deaminase-producing Pseudomonas and Bradyrhizobium

Synergistic N₂-fixation and salt stress mitigation in soybean through dual inoculation of ACC deaminase-producing Pseudomonas and Bradyrhizobium

Rhizosphere frame system enables nondestructive live-imaging of legume-rhizobium interactions in the soil.

Methylocystis iwaonis sp. nov., a type II methane-oxidizing bacterium from surface soil of a rice paddy field in Japan, and emended description of the genus Methylocystis ( ex Whittenbury et al. 1970) Bowman et al. 1993

市民参加型研究プロジェクト「地球冷却微生物を探せ」の現状と展望

土壌由来の温室効果ガス削減に向けた市民科学による微生物探索

土壌微生物群集構造を支配する土壌環境の不均質性に関するミニレビュー：微生物ハビタットとしての土壌を捉えなおす

土壌試料における総N₂O還元速度の定量

Type-specific quantification of particulate methane monooxygenase gene of methane-oxidizing bacteria at the oxic-anoxic interface of a surface paddy soil by digital PCR

Facilitative interaction networks in experimental microbial community dynamics

施肥・栽培と温室効果ガス

Alternative stable states, nonlinear behavior, and predictability of microbiome dynamics

Revisiting process-based simulations of soil nitrite dynamics: Tighter cycling between nitrite and nitrate than considered previously

Deciphering nitrous oxide emissions from tropical soils of different land uses

Feature-based algorithm for large-scale rice phenology detection based on satellite images

ダイズ根粒菌のN₂O還元活性を利用した温室効果ガス（N₂O）の削減

Global soil metagenomics reveals ubiquitous yet previously-hidden predominance of Deltaproteobacteria in nitrogen-fixing microbiome

非マメ科作物の窒素固定エンドファイト

Type III effector provides a novel symbiotic pathway in legume-rhizobia symbiosis

Mitigation of greenhouse gas emission by nitrogen-fixing bacteria

A New Classification of Lysin Motif Receptor-like Kinases in Lotus Japonicus

Strains of Bradyrhizobium barranii sp. nov associated with legumes native to Canada are symbionts of soybeans and belong to different subspecies and symbiovars

Anaeromyxobacter oryzae sp. nov., Anaeromyxobacter diazotrophicus sp. nov. and Anaeromyxobacter paludicola sp. nov., isolated from paddy soils

History of anthropogenic Nitrogen inputs (HaNi) to the terrestrial biosphere: 2 A 5-arcmin resolution annual dataset from 1860 to 2019

Intercontinental Diversity of Caballeronia Gut Symbionts in the Conifer Pest Bug Leptoglossus occidentalis

Effects of source sample amount on biodiversity surveys of bacteria, fungi, and nematodes in soil ecosystems

Fillable and Unfillable Gaps in Plant Transcriptome under Field and Controlled Environments

DeLTa-Seq: direct-lysate targeted RNA-Seq from crude tissue lysate

水田から排出される温室効果ガス―メタンを削減するための育種的，栽培的アプローチ―

温室効果ガス削減と土壌微生物学

In vivo evidence of single 13C and 15N isotope-labeled methanotrophic nitrogen-fixing bacterial cells in rice roots.

Fillable and unfillable gaps in plant transcriptome under field and controlled environments

窒素循環を担う植物共生微生物

N₂O削減根粒菌の利用技術

農耕地・畜産の温室効果ガス排出削減

土壌団粒構造中における微生物の棲み分けに関する科学的知見

Root-specific CLE3 expression is required for WRKY33activation in Arabidopsis shoots

Overview of recent nitrifying microbial research

Appropriate chamber deployment time for separate quantification of CH₄ emissions via plant and ebullition from rice paddies using a modified closed-chamber method

Quantifying bubbling emission (ebullition) of methane from a rice paddy using high-time-resolution concentration data obtained during a closed-chamber measurement

Synergistic and Offset Effects of Fungal Species Combinations on Plant Performance

Undervalued Pseudo-nifH Sequences in Public Databases Distort Metagenomic Insights into Biological Nitrogen Fixers

Quantification of global and national nitrogen budgets for crop production

Multiple Domains in the Rhizobial Type III Effector Bel2-5 Determine Symbiotic Efficiency With Soybean

Evolution of rhizobial symbiosis islands through insertion sequence-mediated deletion and duplication

第１回国際シンポジウム「農業における土壌微生物を活用したクールアース」の開催報告

土壌・植物微生物叢の中で行われるマメ科植物の根粒共生