論文 | dSOILプロジェクト

Methylocystis iwaonis sp. nov., a type II methane-oxidizing bacterium from surface soil of a rice paddy field in Japan, and emended description of the genus Methylocystis ( ex Whittenbury et al. 1970) Bowman et al. 1993

Hirotaka Kaise, Joseph Benewindé Sawadogo, Mohammad Saiful Alam, Chihoko Ueno, Dayéri Dianou, Rina Shinjo, Susumu Asakawa

Int J Syst Evol Microbiol. 2023 Jun;73(6). doi: 10.1099/ijsem.0.005925.
市民参加型研究プロジェクト「地球冷却微生物を探せ」の現状と展望

大久保智司、青木裕一、戸田聡一郎、加藤広海

化学と生物，Vol.61 No.5 pp.210-213
土壌由来の温室効果ガス削減に向けた市民科学による微生物探索

大久保智司、青木裕一

土と微生物，Vol.77 No.1 pp.34-39
土壌微生物群集構造を支配する土壌環境の不均質性に関するミニレビュー：微生物ハビタットとしての土壌を捉えなおす

伊藤虹児、和穎朗太

土と微生物，Vol.77 No.1 pp.18-28
土壌試料における総N₂O還元速度の定量

新宮原諒、中島泰弘、和穎朗太

土と微生物，Vol.77 No.1 pp.8-17
Type-specific quantification of particulate methane monooxygenase gene of methane-oxidizing bacteria at the oxic-anoxic interface of a surface paddy soil by digital PCR

Rina Shinjo, Fumika Oe, Koki Nakagawa, Jun Murase, Susumu Asakawa, Takeshi Watanabe

Environ Microbiol Rep . Apr 20, 2023. doi: 10.1111/1758-2229.13155. Online ahead of print.
Facilitative interaction networks in experimental microbial community dynamics

Hiroaki Fujita, Masayuki Ushio, Kenta Suzuki, Masato S. Abe, Masato Yamamichi, Yusuke Okazaki, Alberto Canarini, Ibuki Hayashi, Keitaro Fukushima, Shinji Fukuda, E. Toby Kiers, and Hirokazu Toju

Front. Microbiol., April 11, 2023 Sec. Systems Microbiology Volume 14 - 2023. doi.org/10.3389/fmicb.2023.1153952
施肥・栽培と温室効果ガス

秋山博子

新植物栄養・肥料学，朝倉書店，2023年4月5日
Alternative stable states, nonlinear behavior, and predictability of microbiome dynamics

Hiroaki Fujita, Masayuki Ushio, Kenta Suzuki, Masato S Abe, Masato Yamamichi, Koji Iwayama, Alberto Canarini, Ibuki Hayashi, Keitaro Fukushima, Shinji Fukuda, E Toby Kiers, Hirokazu Toju

Microbiome . Mar 29, 2023;11(1):63. doi: 10.1186/s40168-023-01474-5.
Revisiting process-based simulations of soil nitrite dynamics: Tighter cycling between nitrite and nitrate than considered previously

Jinsen Zheng, Kazumichi Fujii, Keisuke Koba, Wolfgang Wanek, Christoph Müller, Anne B. Jansen-Willems, Yasuhiro Nakajima, Rota Wagai, Alberto Canarini

Soil Biology and Biochemistry Volume 178, March 2023. doi.org/10.1016/j.soilbio.2023.108958
Deciphering nitrous oxide emissions from tropical soils of different land uses

Jinsen Zheng, Tadashi Sakata, Sukartiningsih, and Kazumichi Fujii

Sci Total Environ. Mar 1, 2023 ;862:160916. doi: 10.1016/j.scitotenv.2022.160916. Epub 2022 Dec 14.
ダイズ根粒菌のN₂O還元活性を利用した温室効果ガス（N₂O）の削減

板倉学

作物生産と土づくり，2022年 12月・2023年1月号 pp.10-15
Global soil metagenomics reveals ubiquitous yet previously-hidden predominance of Deltaproteobacteria in nitrogen-fixing microbiome

Yoko Masuda, Kazumori Mise, Zhenxing Xu, Zhengcheng Zhang, Yutaka Shiratori, Keishi Senoo, and Hideomi Itoh

Preprint. bioRxiv. doi.org/10.1101/2022.12.09.519847.
非マメ科作物の窒素固定エンドファイト

南澤究

作物生産と土づくり，2022年10•11月号 pp.21-25
Type III effector provides a novel symbiotic pathway in legume-rhizobia symbiosis

Safirah Tasa Nerves Ratu, Lidia Amelia, and Shin Okazaki

Bioscience, Biotechnology, and Biochemistry, Nov 11, 2022;87(1):28-37. doi: 10.1093/bbb/zbac178.
Mitigation of greenhouse gas emission by nitrogen-fixing bacteria

Kiwamu Minamisawa

Bioscience, Biotechnology, and Biochemistry, Nov 10, 2022;87(1):7-12. doi: 10.1093/bbb/zbac177.
A New Classification of Lysin Motif Receptor-like Kinases in Lotus Japonicus

Hafijur Ruman and Yasuyuki Kawaharada

Plant and Cell Physiology, 2022 Nov 5;pcac156. doi: 10.1093/pcp/pcac156.
Strains of Bradyrhizobium barranii sp. nov associated with legumes native to Canada are symbionts of soybeans and belong to different subspecies and symbiovars

Eden S. P. Bromfield, Sylvie Cloutier, Sawa Wasai-Hara, and Kiwamu Minamisawa

Int J Syst Evol Microbiol. Oct 19, 2022;72(10). doi: 10.1099/ijsem.0.005549.
Anaeromyxobacter oryzae sp. nov., Anaeromyxobacter diazotrophicus sp. nov. and Anaeromyxobacter paludicola sp. nov., isolated from paddy soils

Hideomi Itoh, Zhenxing Xu, Kazumori Mise, Yoko Masuda, Natsumi Ushijima, Chie Hayakawa, Yutaka Shiratori, and Keishi Senoo

Int J Syst Evol Microbiol, Oct 3, 2022;72(10), doi.org/10.1099/ijsem.0.005546
History of anthropogenic Nitrogen inputs (HaNi) to the terrestrial biosphere: 2 A 5-arcmin resolution annual dataset from 1860 to 2019

Hanqin Tian, Zihao Bian, Hao Shi, Xiaoyu Qin, Naiqing Pan, Chaoqun Lu, Shufen Pan, Francesco N. Tubiello, Jinfeng Chang, Giulia Conchedda, Junguo Liu, Nathan Mueller, Kazuya Nishina, Rongting Xu, Jia Yang, Liangzhi You, and Bowen Zhang

Eath System Science Data, Oct 18, 2022;14(10) ESSD, 14, 4551–4568. doi: 10.1594/PANGAEA.942069

Methylocystis iwaonis sp. nov., a type II methane-oxidizing bacterium from surface soil of a rice paddy field in Japan, and emended description of the genus Methylocystis ( ex Whittenbury et al. 1970) Bowman et al. 1993

市民参加型研究プロジェクト「地球冷却微生物を探せ」の現状と展望

土壌由来の温室効果ガス削減に向けた市民科学による微生物探索

土壌微生物群集構造を支配する土壌環境の不均質性に関するミニレビュー：微生物ハビタットとしての土壌を捉えなおす

土壌試料における総N₂O還元速度の定量

Type-specific quantification of particulate methane monooxygenase gene of methane-oxidizing bacteria at the oxic-anoxic interface of a surface paddy soil by digital PCR

Facilitative interaction networks in experimental microbial community dynamics

施肥・栽培と温室効果ガス

Alternative stable states, nonlinear behavior, and predictability of microbiome dynamics

Revisiting process-based simulations of soil nitrite dynamics: Tighter cycling between nitrite and nitrate than considered previously

Deciphering nitrous oxide emissions from tropical soils of different land uses

ダイズ根粒菌のN₂O還元活性を利用した温室効果ガス（N₂O）の削減

Global soil metagenomics reveals ubiquitous yet previously-hidden predominance of Deltaproteobacteria in nitrogen-fixing microbiome

非マメ科作物の窒素固定エンドファイト

Type III effector provides a novel symbiotic pathway in legume-rhizobia symbiosis

Mitigation of greenhouse gas emission by nitrogen-fixing bacteria

A New Classification of Lysin Motif Receptor-like Kinases in Lotus Japonicus

Strains of Bradyrhizobium barranii sp. nov associated with legumes native to Canada are symbionts of soybeans and belong to different subspecies and symbiovars

Anaeromyxobacter oryzae sp. nov., Anaeromyxobacter diazotrophicus sp. nov. and Anaeromyxobacter paludicola sp. nov., isolated from paddy soils

History of anthropogenic Nitrogen inputs (HaNi) to the terrestrial biosphere: 2 A 5-arcmin resolution annual dataset from 1860 to 2019